Publishing computational research - a review of infrastructures for reproducible and transparent scholarly communication

Table 2 Overview of which application supports the corresponding criteria. (N/D = no data)

	Authorea	Binder	Code Ocean	eLife RDS	Galaxy	Gigantum	Manuscripts	o2r	REANA	Repro Zip	Whole Tale
Free self-hosting	–	+	–	+*	+	–	+	+	+*	+	+
Open license	–	+	–	+	+	+/−	+	+	+	+	+
In use	in use [40]	in use [2]	in use [41]	in use [42]	in use [43]	–	–	–	in use [44]	in use [31]	–
Grant-based	–	+	–	+	+	–	N/D	+	+	+	+
R Markdown	–	+	+	+	–	+	–	+	–	–	+
Jupyter Notebooks	+	+	+	+	+	+	–	–	+	+	+
Extensible	–	+	+	+	+	–	–	–	+	+	+
Upload	+	+	+	–	+	–	+	+	–	–	+
Copyright	+	N/D	+	N/D	+	+	N/D	+	N/D	N/D	+
Sensitive data	–	–	–	–	–	–	–	–	–	–	–
Discovery	+	–	+	+	+	–	–	+	–	–	+
Inspection	+	+	+	+	+	+	+	+	–	–	+
Execution	+	+	+	+	+	+	+	+	+	+	+
Manipulation	+	+	+	+	+	+	+	+	+	+	+
Substitution	–	–	–	–	–	–	–	+	–	+	–
Download	+	+	+	+	+	+	+	+	–	+	+
Modify/Delete after publishing	–	+	–	–	+	+	+	–	+	+	–
Shared via DOI	+	–	+	+	–	–	–	–	–	–	+
Shared via URL	+	+	+	+	+	+	+	+	–	+	–

ISSN: 2058-8615